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10016 - UBE2C, Bladder Cancer


UBE2C is only expressed at low levels in normal tissues, see [1]. However, the expression of UBE2C is high in cancerous tissues of various origins, see [2]. High level of UBE2C expression is prognostic of poor survival in colorectal, thyroid, breast, see [3], ovarian cancer, see [4], lymphoid neoplasm, and in non-small cell lung cancer, see [5]. UBE2C might be a potential marker for tumor response to therapy when down-regulation is detected and the potential of UBE2C as a therapeutic target in cancer should be further explored, see [2].

This APP can be used for quantifying the cytoplasmic expression of UBE2C. A statistically significant correlation to manual scoring, in a study involving 300 patients was found (publication pending).

UBE2C, bladder cancer, metastasis, immunohistochemistry, image analysis, quantitative, digital pathology.

The method used for computing the UBE2C expression is based on a smoothed color-contrast between the red and the blue color band. An intensity threshold is used to determine positivity and negativity of the cytoplasmic expression. 

From the segmentation, the average DAB intensity across all positive cytoplasm areas is measured and subtracted from 255. This is done in to associate high values with a high staining intensity, which is more intuitive.

It should be noted that this approach to quantifying biomarker expression is vulnerable to variations in protocols for tissue preparation (fixation time, tissue thickness, reagents, auto-stainer type and settings, etc.). Furthermore, the application of this APP for TMA study designs is robust within the TMA. 

The output variables obtained from this protocol include:

  • Positive Cytoplasmic Area: Total area within ROI, with DAB intensity above defined threshold

  • Tumor Area: Total area of the manually outlined tumor area (ROI)

  • Positive Area Fraction = Positive Cytoplasmic Area / Tumor Area

  • Positive Cytoplasm Intensity = 255 - average DAB intensity for positive cytoplasm

  • Expression = Positive Area Fraction * Positive Cytoplasm Intensity

Auxiliary APPs are used for additional process steps, e.g. finding Region of Interest (ROI).
There are no Auxiliary APPs available.

There is no staining protocol available.

This APP was developed for, and validated by, Niels Fristrup MD and Dr. Lars Dyrskjøt Andersen, Center for Molecular Clinical Cancer Research Department of Molecular Medicine (MOMA) Aarhus University Hospital

The APP utilizes the Engine™ and Viewer software modules, where Engine™ offers an execution platform to expand processing capability and speed of image analysis. Viewer gives a fast review together with several types of image adjustment properties ex. outlining of regions, annotations and direct measures of distance, curve length, radius, etc. 
By adding the Author™ module the APP can be customized to fit other purposes. Author™ offers a comprehensive and dedicated set of tools for creating new fit-for-purpose analysis APPs, and no programming experience is required.


This APP was developed for, and validated by, Niels Fristrup MD and Dr. Lars Dyrskjøt Andersen, Center for Molecular Clinical Cancer Research Department of Molecular Medicine (MOMA) Aarhus University Hospital

1. Okamoto, Y., et. al. UbcH10 is the cancer-related E2 ubiquitinconjugating enzyme, Cancer Res. 2003, 63 (14), 4167-73, DOI

2. Hao, Z., et. al. Ubiquitin-conjugating enzyme UBE2C: molecular biology, role in tumorigenesis, and potential as a biomarker, Tumour Biol. 2012, 33 (3), 723-30, DOI

3. Loussouarn, D., et. al. Validation of UBE2C protein as a prognostic marker in node-positive breast cancer, Br J Cancer 2009, 101 (1), 166-73, DOI

4. Berlingieri, M.T., et. al. UbcH10 expression may be a useful tool in the prognosis of ovarian carcinomas, Oncogene 2007, 26 (14), 2136-40, DOI

5. Kadara, H., et. al. Identification of gene signatures and molecular markers for human lung cancer prognosis using an in vitro lung carcinogenesis system, Cancer Prev Res 2009, 2 (8), 702-11, DOI

Image of a manually outlined tumor region in a bladder tissue TMA core stained by IHC for UBE2C.
The same image as in FIGURE 1 after automated segmentation for UBE2C-positively stained cytoplasm (red label).