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10013 - CyclinD1, Bladder Cancer

INTRODUCTION

Cyclin D1 is often deregulated in cancer and is a biomarker of cancer phenotype and disease progression [See REFERENCES: 1]. Cyclin D1 has been shown to regulate the expression of genes that are involved in DNA replication and the DNA damage checkpoint, and it has also been shown to interact with DNA damage response proteins [See REFERENCES: 2, 3]. Cyclin D1 overexpression is associated with shorter patient survival in many cancers and has been shown to associate with increased metastasis [See REFERENCES: 4, 5]. The ability of Cyclin D1 to activate the cyclin-dependent kinases CDK4 and CDK6 is an extensively documented mechanism for its oncogenic actions and could therefore be a possible therapeutic target in future medicine [See REFERENCES: 1].

This APP can be used for quantifying the nuclear expression of Cyclin D1. The approach to calculating expression used here, was demonstrated to have a very high correlation to manual scoring in a study involving 300 patients (R2 = 0.85), (publication pending).

KEYWORDS

Cyclin D1, bladder cancer, metastasis, immunohistochemistry, image analysis, quantitative, digital pathology.

METHODS

The method used for computing the Cyclin D1 expression is started by detecting nuclei using a novel pattern recognition method adapted from Dahl et al [See REFERENCES: 8], which is followed by a step that separates adjacent nuclei [See REFERENCES: 9]. The detected nuclei are classified as either positive or negative based on a computation of DAB intensity, obtained using color deconvolution.

This leads to the calculation of the positive area fraction, as the area of positive nuclei divided by the total area of nuclei (within the outlined ROI). This is followed by the measurement of the average DAB intensity across all positive nuclei, which is subtracted from 255, to associate higher values with a high staining intensity, which is more intuitive. The expression is then calculated by multiplying the intensity with the area fraction.

The actual implementation of the pattern recognition allows the user to choose settings for nuclear detection sensitivity and classification into positive and negative, in order to account for differences in local staining protocols.

It should be noted that this approach to quantifying biomarker expression is vulnerable to variations in protocols for tissue preparation (fixation time, tissue thickness, reagents, auto-stainer type settings, etc.). Using this APP for TMA study designs should be quite robust, for the cores within the TMA.

This APP requires manual outlining of tumor regions.

QUANTITATIVE OUTPUT VARIABLES

The output variables obtained from this protocol include:

- Nuclear Area: Total area of all nuclei within tumor ROI

- Positive Area: Total area of positive nuclei within tumor ROI

- Positive Area Fraction = Positive area / Nuclear area

- INT = 255 - average DAB intensity for positive nuclei

- Expression = Positive Area Fraction * INT


AUXILIARY APPS (included)

Auxiliary APPs are used for additional process steps, e.g. finding Region of Interest (ROI).

There are no Auxiliary APPs available.



STAINING PROTOCOL

There is no staining protocol available


ADDITIONAL INFORMATION

This APP was developed for, and validated by, Niels Fristrup MD and Dr. Lars Dyrskjøt Andersen, Center for Molecular Clinical Cancer Research Department of Molecular Medicine (MOMA) Aarhus University Hospital

The APP utilizes the EngineTM and Viewer software modules, where EngineTM offers an execution platform to expand processing capability and speed of image analysis. Viewer gives a fast review together with several types of image adjustment properties ex. outlining of regions, annotations and direct measures of distance, curve length, radius, etc.
By adding the AuthorTM module the APP can be customized to fit other purposes. AuthorTM offers a comprehensive and dedicated set of tools for creating new fit-for-purpose analysis APPs, and no programming experience is required.


REFERENCES

USERS

This APP was developed for, and validated by, Niels Fristrup MD and Dr. Lars Dyrskjøt Andersen, Center for Molecular Clinical Cancer Research Department of Molecular Medicine (MOMA) Aarhus University Hospital

LITTERATURE

1. Cyclin D as a therapeutic target in cancer, E. A. Musgrove, C. E. Caldon, J. Barraclough, A. Stone, R. L. Sutherland, Nat Rev Cancer Jul 7;11(8):558-72, 2011. doi: 10.1038/nrc3090.

2. A function for cyclin D1 in DNA repair uncovered by protein interactome analyses in human cancers, S. Jirawatnotai et al., Nature 474, 230-234,2011.

3. Alternative cyclin D1 splice forms differentially regulate the DNA damage response, Z. Li et al., Cancer Res. 70, 8802-8811, 2010.

4. Genetic and molecular pathogenesis of mantle cell lymphoma: perspectives for new targeted therapeutics, P. Jares et al., Nature Rev. Cancer 7, 750-762, 2007.

5. Molecular predictors of clinical outcome in patients with head and neck squamous cell carcinoma, G. R. Thomas et al., Int. J. Exp. Pathol. 86, 347-363, 2005.

6. Learning Dictionaries of Discriminative Image Patches, A. L. Dahl et al., British Machine Vision Conference 2011.

7. Segmenting Clustered Nuclei Using H-minima Transform-Based Marker Extraction and Contour Parameterization, C. Jung et al., IEEE Transactions on Biomedical Engineering, 57(10): 2600-2604, 2010

RUO
FIGURE 1
FIGURE 1
Image of TMA core with bladder tumor tissue after staining by IHC for CyclinD1.
FIGURE 2
FIGURE 2
The same image as in Figure 1 after manual outlining of the tumor tissue ROI.
FIGURE 3
FIGURE 3
The same image as in Figure 1 after automatic segementation of CyclinD1-positive (red label) and -negative (green label) cell nuclei detected within the tumor ROI.